If you have set GradeQuick to calculate semester averages, whenever you create a special score, you will be prompted to choose whether to assign that score to a particular semester or to the final average.
Do not remove the term number from test columns unless you want to treat the column as a special score. You may enter up to 10 special scores in each gradebook.
If you are exporting these special scores, be sure to name the test column as you are instructed or it will not export properly. The GradeQuick administrator should give you instructions for naming of the exam.